Skip to main content
Log in

Genomic recombination in primate bocavirus: inconsistency and alternative interpretations

  • Published:
Virus Genes Aims and scope Submit manuscript

Abstract

Human bocavirus (HBoV) is a single-stranded DNA virus in Parvoviridae family, causing respiratory diseases in human. The recent identifications of genomic recombination among the four human bocavirus genotypes and related non-human primate bocaviruses have shed lights into the evolutionary processes underpinning the diversity of primate bocavirus. Among these reports, however, we found inconsistency and possible alternative interpretations of the recombination events. In this study, these recombination events were reviewed, and the related genome sequences were re-analysed, aiming to inform the research community of bocavirus with more consistent knowledge and comprehensive interpretations on the recombination history of primate bocavirus.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

Abbreviations

BoV:

Bocavirus

HBoV:

Human bocavirus

References

  1. T. Allander, M.T. Tammi, M. Eriksson, A. Bjerkner, A. Tiveljung-Lindell, B. Andersson, Proc. Natl. Acad. Sci. USA 102, 12891–12896 (2005)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. W. Cheng, J. Chen, Z. Xu, J. Yu, C. Huang, M. Jin, H. Li, M. Zhang, Y. Jin, Z.J. Duan, BMC Infect. Dis. 11, 50 (2011)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. A. Kapoor, E. Slikas, P. Simmonds, T. Chieochansin, A. Naeem, S. Shaukat, M.M. Alam, S. Sharif, M. Angez, S. Zaidi, E. Delwart, J. Infect. Dis. 199, 196–200 (2009)

    Article  PubMed  PubMed Central  Google Scholar 

  4. N. Lasure, V. Gopalkrishna, J. Med. Virol. 89, 17–23 (2017)

    Article  PubMed  Google Scholar 

  5. D.M. Zhang, M.M. Ma, W.T. Wen, X. Zhu, L. Xu, Z.J. He, X. He, J.H. Wu, Y.W. Hu, Y. Zheng, Y. Deng, C.J. Lin, J.H. Lu, M.F. Li, K.Y. Cao, Epidemiol. Infect. 143, 2315–2329 (2015)

    Article  PubMed  Google Scholar 

  6. K. Brozova, K. Hrazdilova, E. Slaninkova, D. Modry, J. Cerny, V. Celer, Infect. Genet. Evol. 37, 231–236 (2016)

    Article  CAS  PubMed  Google Scholar 

  7. X. Fu, X. Wang, B. Ni, H. Shen, H. Wang, X. Zhang, S. Chen, S. Shao, W. Zhang, Virol. J. 8, 182 (2011)

    Article  PubMed  PubMed Central  Google Scholar 

  8. A. Kapoor, N. Mehta, F. Esper, M. Poljsak-Prijatelj, P.L. Quan, N. Qaisar, E. Delwart, W.I. Lipkin, PLoS ONE 5, e11948 (2010)

    Article  PubMed  PubMed Central  Google Scholar 

  9. R.C. Edgar, BMC Bioinform. 5, 113 (2004)

    Article  Google Scholar 

  10. S. Guindon, F. Delsuc, J.F. Dufayard, O. Gascuel, Methods Mol. Biol. 537, 113–137 (2009)

    Article  CAS  PubMed  Google Scholar 

  11. I.V. Babkin, A.I. Tyumentsev, A.Y. Tikunov, A.M. Kurilshikov, E.I. Ryabchikova, E.V. Zhirakovskaya, S.V. Netesov, N.V. Tikunova, Infect. Genet. Evol. 14, 265–274 (2013)

    Article  PubMed  Google Scholar 

  12. D.P. Martin, D. Posada, K.A. Crandall, C. Williamson, A.I.D.S. Res, Hum. Retrovir 21, 98–102 (2005)

    Article  CAS  Google Scholar 

  13. D.P. Martin, P. Lemey, M. Lott, V. Moulton, D. Posada, P. Lefeuvre, Bioinformatics 26, 2462–2463 (2010)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. J. Lusebrink, V. Schildgen, R.L. Tillmann, F. Wittleben, A. Bohmer, A. Muller, O. Schildgen, PLoS ONE 6, e19457 (2011)

    Article  PubMed  PubMed Central  Google Scholar 

  15. A. Kapoor, M. Hornig, A. Asokan, B. Williams, J.A. Henriquez, W.I. Lipkin, PLoS ONE 6, e21362 (2011)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. O. Schildgen, J. Qiu, M. Soderlund-Venermo, Future Virol 7, 31–39 (2012)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

This paper is supported by the Malaysia Ministry of Education under Fundamental Research Grant Scheme (FRGS/STG35(02)/963/2013(04)). The authors thank the researchers for sharing their bocavirus genome sequences in GenBank.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yee Ling Chong.

Ethics declarations

Conflict of interest

The authors declare that they have no competing interests.

Additional information

Edited by Detlev H. Kruger.

Yee Ling Chong and Kar Hon Ng have contributed equally to this study.

Availability of data and materials

The datasets analysed during the current study are available in the GenBank repository, with the accession numbers indicated before the strain names in the figure.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Chong, Y.L., Ng, K.H. Genomic recombination in primate bocavirus: inconsistency and alternative interpretations. Virus Genes 53, 774–777 (2017). https://doi.org/10.1007/s11262-017-1459-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11262-017-1459-6

Keywords

Navigation