Article
Papillary tumor of the pineal region: A distinct molecular entity
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Published: | August 25, 2015 |
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Question: Papillary tumor of the pineal region (PTPR) is a neuroepithelial brain tumor which might pose diagnostic difficulties and recurs often. Little is known about underlying molecular alterations.
Methods: Chromosomal copy number alterations (Affymetrix Oncoscan MIP SNP Array), DNA methylation patterns (Illumina 450k Array) and mRNA expression profiles (Affymetrix GeneChip U133 Plus 2.0) were examined in a series of 24 PTPR.
Results: Losses of chromosome 10 were identified in all PTPR examined. Losses of chromosome 3 and 22q (54%) as well as gains of chromosomes 8p (62%) and 12 (46%) were also common. DNA methylation profiling reliably distinguished PTPR from ependymomas and pineal parenchymal tumors of intermediate differentiation. PTPR could be divided into two subgroups based on methylation pattern, PTPR group 2 showing higher global methylation and a tendency towards shorter progression-free survival (p=0.06). Genes over-expressed in PTPR as compared to ependymal tumors included SPDEF, known to be expressed in the rodent subcommissural organ. Notable SPDEF protein expression was encountered in 15/19 PTPR as compared to only 2/36 ependymal tumors, 2/19 choroid plexus tumors and 0/23 samples of other CNS tumors entities.
Conclusion: PTPR show typical chromosomal alterations as well as distinct DNA methylation and expression profiles, which might serve as useful diagnostic tools.