On estimation and identifiability issues of sex-linked inheritance with a case study of pigmentation in Swiss barn owl (Tyto alba)

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Version: Final published version
Serval ID
serval:BIB_152C15ECA0C2
Type
Article: article from journal or magazin.
Collection
Publications
Institution
Title
On estimation and identifiability issues of sex-linked inheritance with a case study of pigmentation in Swiss barn owl (Tyto alba)
Journal
Ecology and Evolution
Author(s)
Larsen C.T., Holland A.M., Jensen H., Steinsland I., Roulin A.
ISSN
2045-7758
Publication state
Published
Issued date
2014
Peer-reviewed
Oui
Volume
4
Number
9
Pages
1555-1566
Language
english
Abstract
Genetic evaluation using animal models or pedigree-based models generally assume only autosomal inheritance. Bayesian animal models provide a flexible framework for genetic evaluation, and we show how the model readily can accommodate situations where the trait of interest is influenced by both autosomal and sex-linked inheritance. This allows for simultaneous calculation of autosomal and sex-chromosomal additive genetic effects. Inferences were performed using integrated nested Laplace approximations (INLA), a nonsampling-based Bayesian inference methodology. We provide a detailed description of how to calculate the inverse of the X- or Z-chromosomal additive genetic relationship matrix, needed for inference. The case study of eumelanic spot diameter in a Swiss barn owl (Tyto alba) population shows that this trait is substantially influenced by variation in genes on the Z-chromosome (sigma(2)(z) = 0.2719 and sigma(2)(a) = 0.4405). Further, a simulation study for this study system shows that the animal model accounting for both autosomal and sex-chromosome-linked inheritance is identifiable, that is, the two effects can be distinguished, and provides accurate inference on the variance components.
Keywords
Approximate Bayesian animal model, barn owl (Tyto alba), integrated nested Laplace approximation, quantitative genetics, sex chromosome, sex-linked additive genetic effects
Web of science
Open Access
Yes
Create date
10/02/2014 23:19
Last modification date
20/08/2019 13:44
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