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SBML Level 3 package: Render, Version 1, Release

  • Many software tools provide facilities for depicting reaction network diagrams in a visual form. Two aspects of such a visual diagram can be distinguished: the layout (i.e.: the positioning and connections) of the elements in the diagram, and the graphical form of the elements (for example, the glyphs used for symbols, the properties of the lines connecting them, and so on). This document describes the SBML Level 3 Render package that complements the SBML Level 3 Layout package and provides a means of capturing the precise rendering of the elements in a diagram. The SBML Level 3 Render package provides a flexible approach to rendering that is independent of both the underlying SBML model and the Layout information. There can be one block of render information that applies to all layouts or an additional block for each layout. Many of the elements used in the current render specification are based on corresponding elements from the SVG specification. This allows us to easily convert a combination of layout information and render information into a SVG drawing.

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Metadaten
Author:Frank T. BergmannORCiD, Sarah M. KeatingORCiD, Ralph Gauges, Sven Sahle, Katja Wengler
URN:urn:nbn:de:bsz:991-opus-741
DOI:https://doi.org/doi:10.1515/jib-2017-0078
Parent Title (English):Journal of Integrative Bioinformatics, 2018 Apr 2;15(1)
Publisher:De Gruyter
Document Type:Article
Language:English
Year of first Publication:2018
Release Date:2022/09/22
Volume:2018
Page Number:101
Peer Review:Peer Review
Licence (German):License LogoCreative Commons - CC BY-ND - Namensnennung - Keine Bearbeitungen 4.0 International